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Course details 2012-2013  
    
Biomedical digital signal and image processing
Course Code :2022FBDBMW
Study domain:Physics
Semester:Semester: 2nd semester
Contact hours:55
Credits:6
Study load (hours):168
Contract restrictions: Exam contract not possible
Language of instruction :Dutch
Exam period:exam in the 2nd semester
Tutor(s)Jan Sijbers
Dirk Van Dyck

 


1. Prerequisites

At the start of this course the student should have acquired the following competences:

  • Competences corresponding the final attainment level of secondary school

An active knowlegde of :
  • Dutch
  • English
Specific prerequisites for this course:
Basic knowledge of mathematical techniques (bachelor level) is required.


2. Learning outcomes


To impart knowledge and understanding of analysis of signals and systems when considered in the time and frequency domains, and to enable the student to formally analyse systems through the use of spectral analysis and correlations. The student will also be able to take account of the effects of sampling in the time and frequency domain and understand how these affect the practical analysis procedures. The students will be able to select the appropriate infinite or finite impulse response digital filter and undertake the design of the filter coefficients. The student should gain a familiarity with the derivation of the fast Fourier transform (FFT) algorithm and with its computational advantages.

The objective of image processing part is to provide students with an overview of the computational and mathematical methods in biomedical image processing. The course covers the main sources of medical imaging data (CT, MRI, PET, and ultrasound). We will study many of the current methods used to enhance and extract useful information from biomedical images.

 

The student should be able to:
  1. Explain the relationships between and be able to manipulate time domain and frequency domain representations of signals.
  2. Apply correlation techniques to an analytic or numerical problem, and relate the outcome to the properties of the signal source(s).
  3. recall how the discrete Fourier transform arises and recognise the effect of resolution and windowing functions upon the discrete Fourier transform;
  4. derive the structure of the fast Fourier transform from the equation of the discrete Fourier transform
  5. analyse the effects of downsampling and upsampling on a signal and recognise the importance of decimation and interpolation filtering.
  6. Basic concepts for digital images, e.g. pixel, grey level, histogram, frame.
  7. Linear filtering, including smoothing, sharpening and edge detection.
  8. Detection of image structures 
  9. Image processing in MatLab



3. Course contents

The following chapters will be discussed:

  1. signals and systems
  2. time domain description and convolution
  3. LTI system and its properties
  4. Fourier transformations
  5. Laplace transform
  6. Sampling
  7. Z-transform
  8. Filter design
  9. wavelet transform



4. Teaching method

Class contact teaching:
  • Lectures
  • Practice sessions
  • Laboratory sessions



  • 5. Assessment method and criteria

    Examination:
  • Written with oral presentation
  • Oral with written preparation
  • Closed book
  • Practical examination


  • 6. Study material

    Required reading

    The course material that is provided: text + slides.

    Highly recommended:

    Zhi-Pei Liang and Paul Lauterbur, Principles of Magnetic Resonance Imaging: A Signal Processing Perspective, IEEE Press Series in Biomedical Engineering


    Optional reading

    The following study material can be studied on a voluntary basis:

    A. V. Oppenheim and R. W. Schafer and J. R. Buck, “Discrete-time Signal Processing”, Prentice-Hall, Second Ed., 1999.




    7. Contact information

     

    ------------------------------------------------------

    Prof. Dr. Jan Sijbers

    Universiteitsplein 1, B-2610 Wilrijk, Belgium

    Tel: +32 3 265 24 64      Fax: +32 3 265 22 45

    Elm: jan.sijbers@ua.ac.be

    www: http://visielab.ua.ac.be/staff/sijbers

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    (+)last update: 12/10/2012 18:06 jan.sijbers  

     
    Inhoudsverantwoordelijke(n) : Facultaire administratie